My Research Toolbox

Georgia
Georgia's Virtual Vault-Death certificates; marriage records; Confederate oaths, discharges and pension applications; maps; photographs and more
Berrien County Georgia Historical Photos Collection-Photos of families, businesses, churches, schools and more in Berrien County
South Georgia Historic Newspapers-Searchable archive of newspapers in Albany, Thomasville, Americus and Valdosta from mid 1800s to early 1900s
Historical Atlas of Georgia-Great resource for maps of Georgia at the time your ancestors were in an area

Indiana
Indiana State Digital Archives-Includes death, naturalization, military, institution and miscellaneous history records
Indiana State Library Databases-Scroll down to get to free ones. Biographies, cemeteries, marriages, military, family histories and more
Browning Genealogy Database-Transcriptions (and sometimes actual images) of obituaries from Evansville and surrounding areas. Early 1900s to present. Also includes Local History Database of clippings from Evansville Press.
Historic Evansville-Photos, maps and history of Evansville.

Kentucky
Kentuckiana Digital Library-Digital collections from the Kentucky archives. Includes maps, books, manuscripts and more.
Owensboro Area Obituary Index- Detailed abstracts from 1842 to 1919, brief extracts from 1920-1989
Kentucky Vital Records Index-From University of Kentucky, includes deaths 1911-1992 (separated into 2 databases), marriages 1973-1993 and divorces 1973-1993

South Carolina
South Carolina Archives-Online records index, digital collections including colonial plats, Confederate pension applications
Beaufort County Library Obituary Index-Index only. Dates from late 1800s

Virginia
Virginia Memory-Multiple collections including photographs, newspapers and more.

West Virginia
West Virginia Vital Research Records-Index and images of birth, marriage and death records in West Virginia. Coverage ranges from mid 1800s to early to mid 1900s in most counties.
Hackers Creek Pioneer Descendants-Resource for central West Virginia genealogy. Membership ($) required to access all files, but some are free.
West Virginia Pioneers-Books, maps, cemetery photos, some census transcriptions, some transcribed deeds and wills

Miscellaneous
USGenWeb-Local websites for each county. Information varies between sites, but generally includes local history, cemeteries and lookup volunteers.
What Was There-Links historical photos to present day maps.
Historical US County Boundary Maps-Excellent resource for following boundary changes in an area.
SE Genealogy Resources-Covering Florida and Georgia. Various records including books, family histories, photographs, census, obituaries, vital records and more. Membership ($) required to access all files, but some indexes are free.
DAR Genealogical Research System-Files on patriots of American Revolution and descendants.
FindAGrave-Memorials and cemetery transcriptions. Some memorials have photographs and genealogical information.
Interment-More cemetery transcriptions
GeneaSearch-Miscellaneous data and lookup volunteers.
Free Obituaries Found-Miscellaneous obituary abstracts
Mocavo-Genealogy search engine. While it generally finds things I've already came across, occasionally something new to me is found.
FamilySearch-Tons of free information, many with the actual images. The articles, wiki and research courses are great to improve research skills.
Ancestry-Lots of genealogical data. Membership ($) is required to access everything, but there are some free databases.
Southern Campaign Revolutionary War Pension Statements and Rosters-Transcriptions of pension statements and rosters for Southerners who served in the Revolutionary War.
Bureau of Land Management General Land Office-Land patents, survey plats and  field notes
Timelines-Excellent resource for determining what was happening at a particular point in history
Chronicling America-Library of Congress. Newspapers from 1836 to 1922
Civil War Soldiers and Sailors System-Database by the National Park Service. Various information including data on Civil War soldiers, regiments, cemeteries, battles and prisoners. Some images.
Son of the South: Civil War-Great resource for information on life, people and events during the Civil War
Nationwide Grave Locator-By Department of Veterans Affairs. Use to locate veteran's gravesites
Geographic Names Information Search-Use to find cemeteries and other features in an area.
Black Sheep Ancestors-Various records for US, Canada, UK and international black sheep ancestors.